STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC55029.1Carbon dioxide concentrating mechanism/carboxysome shell protein. (144 aa)    
Predicted Functional Partners:
SKC54999.1
Ethanolamine utilization protein EutN.
 
 
 0.946
SKC35974.1
Ethanolamine utilization protein EutN.
 
 
 0.906
SKC91878.1
Ethanolamine utilization protein EutN.
 
 
 0.906
SKC38101.1
Ethanolamine utilization protein EutN.
 
 
 0.900
SKC81584.1
Ethanolamine utilization protein EutN.
 
 
 0.898
SKC88557.1
Ethanolamine utilization protein EutN.
 
 
 0.840
SKC35988.1
Ethanolamine utilization protein EutL, ethanolamine utilization microcompartment shell protein.
 
 
 
 0.802
SKC55036.1
Hypothetical protein.
       0.709
SKC55013.1
Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
   
0.701
SKC55041.1
Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
   
0.695
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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