STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC55668.1Sugar phosphate permease. (433 aa)    
Predicted Functional Partners:
SKC47627.1
iron(III) transport system substrate-binding protein.
  
  
 0.674
SKC84863.1
iron(III) transport system substrate-binding protein.
  
  
 0.674
SKC89750.1
MFS transporter, OFA family, oxalate/formate antiporter.
  
 
 0.641
SKC81294.1
Chorismate mutase.
   
 
 0.616
SKC87392.1
NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family.
  
 
  0.598
SKC64053.1
Two-component system, NarL family, sensor histidine kinase DegS.
    
  0.594
SKC84193.1
Sugar phosphate permease.
  
 
 0.492
SKC55676.1
Uncharacterized protein.
       0.465
SKC55659.1
Imidazolonepropionase.
       0.455
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
  
 0.450
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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