STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC56179.1Peptide/nickel transport system substrate-binding protein. (544 aa)    
Predicted Functional Partners:
SKC56159.1
Signal transduction histidine kinase.
 
    0.894
SKC36691.1
Peptide/nickel transport system permease protein.
 0.869
SKC90182.1
Peptide/nickel transport system permease protein.
 0.863
SKC65695.1
Peptide/nickel transport system permease protein.
 0.857
SKC56154.1
Response regulator of citrate/malate metabolism.
 
     0.856
SKC36965.1
Peptide/nickel transport system permease protein.
 0.852
SKC49835.1
Glutathione transport system permease protein.
 0.846
SKC79005.1
Peptide/nickel transport system permease protein.
 0.842
SKC39241.1
Glutathione transport system permease protein.
 0.839
SKC38691.1
Oligopeptide transport system permease protein.
 0.818
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.