STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC58623.1Stage II sporulation protein D. (479 aa)    
Predicted Functional Partners:
SKC57450.1
N-acetylmuramoyl-L-alanine amidase.
0.923
SKC84891.1
Uncharacterized protein conserved in bacteria.
  
 
 0.783
SKC72095.1
Uncharacterized lipoprotein YddW, UPF0748 family.
 
 
 0.781
SKC92496.1
N-acetylmuramoyl-L-alanine amidase.
 
 
0.780
SKC50530.1
Outer membrane lipoprotein-sorting protein.
  
   0.774
SKC88456.1
Cell wall-associated hydrolase, NlpC family.
 
 
 0.758
SKC81970.1
Hypothetical protein.
  
 
  0.754
SKC38706.1
Muramoyltetrapeptide carboxypeptidase.
    
 0.734
SKC78856.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 
 0.726
SKC84945.1
Bla regulator protein blaR1.
 
 
0.722
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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