STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC62318.1Site-specific recombinase XerD. (208 aa)    
Predicted Functional Partners:
SKC62307.1
Hypothetical protein.
       0.773
SKC62377.1
Hypothetical protein.
 
     0.759
SKC62398.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
     0.750
SKC62412.1
Phage portal protein, HK97 family.
 
     0.750
SKC62427.1
Hypothetical protein.
 
   
 0.711
SKC62325.1
Uncharacterized protein YjcR.
 
     0.620
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.563
SKC62437.1
Phage major capsid protein, HK97 family.
 
     0.526
SKC69137.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.492
SKC62282.1
Sigma-70, region 4.
       0.480
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.