STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC62377.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
SKC62398.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
  
 0.950
SKC62412.1
Phage portal protein, HK97 family.
 
  
 0.932
SKC62427.1
Hypothetical protein.
 
     0.908
SKC62437.1
Phage major capsid protein, HK97 family.
 
  
 0.897
SKC62325.1
Uncharacterized protein YjcR.
 
   
 0.888
SKC40893.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
    
  0.761
SKC62318.1
Site-specific recombinase XerD.
 
     0.759
SKC77758.1
Type IV secretion system protein VirD4.
   
 
 0.756
SKC80068.1
Type IV secretion system protein VirD4.
   
 
 0.756
SKC70868.1
Transposase DDE domain-containing protein.
  
     0.653
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.