STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC63941.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (322 aa)    
Predicted Functional Partners:
SKC63921.1
Protein CcmA, bactofilin family.
 
   
 0.916
SKC74356.1
Flagellar motor switch protein FliN/FliY.
   
 
 0.767
SKC86462.1
Monofunctional biosynthetic peptidoglycan transglycosylase.
  
   
 0.732
SKC91513.1
Penicillin-binding protein 1A.
  
   
 0.698
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 
 0.572
SKC41149.1
Membrane proteins related to metalloendopeptidases.
  
     0.570
mraY
Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
 
 0.568
SKC69586.1
Penicillin-binding protein 2.
 
   
 0.557
SKC50994.1
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.520
SKC63953.1
Diguanylate cyclase (GGDEF) domain-containing protein.
     
 0.520
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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