STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC65315.1Putative sporulation protein YtaF; Probably functions as a manganese efflux pump. (209 aa)    
Predicted Functional Partners:
SKC65319.1
Hypothetical protein.
       0.773
SKC91157.1
Sporulation protein YabP.
  
   
 0.708
SKC91504.1
Stage V sporulation protein AF.
  
     0.700
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.681
SKC72218.1
Stage III sporulation protein AE.
  
     0.628
SKC50437.1
Spore photoproduct lyase.
  
     0.617
SKC87333.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.586
SKC73817.1
Sporulation protein YtrH.
  
     0.552
SKC91492.1
Stage V sporulation protein AD.
  
    0.537
SKC72306.1
SpoIVB peptidase. Serine peptidase. MEROPS family S55.
  
     0.531
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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