STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC70168.1Putative membrane protein, TIGR04086 family. (131 aa)    
Predicted Functional Partners:
SKC70209.1
BofC C-terminal domain-containing protein.
 
     0.788
SKC72224.1
Stage III sporulation protein AF.
  
    0.777
SKC56238.1
TATA-box binding.
  
     0.772
SKC83499.1
Hypothetical protein.
  
     0.769
SKC83496.1
Hypothetical protein.
  
     0.765
SKC58569.1
LysM domain-containing protein.
  
    0.750
SKC50530.1
Outer membrane lipoprotein-sorting protein.
  
    0.738
SKC70152.1
Six-cysteine peptide SCIFF.
       0.724
SKC79608.1
Putative amidase domain-containing protein.
  
     0.697
SKC70174.1
Protein translocase subunit yajC.
       0.694
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.