SKC73496.1 protein (Maledivibacter halophilus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKC73496.1

Uncharacterized protein conserved in bacteria. (205 aa)

Predicted Functional Partners:

SKC65999.1

0.632

hutU

0.631

SKC72613.1

0.602

SKC73479.1

0.566

SKC73489.1

0.566

SKC82909.1

0.566

SKC70230.1

0.543

SKC84834.1

0.535

SKC83179.1

0.525

SKC91800.1

0.523

Your Current Organism:

Maledivibacter halophilus

NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC65999.1	SKC73496.1	SAMN02194393_02063	SAMN02194393_02735	Acetyltransferase (GNAT) domain-containing protein.	Uncharacterized protein conserved in bacteria.	0.632
SKC65999.1	SKC82909.1	SAMN02194393_02063	SAMN02194393_03775	Acetyltransferase (GNAT) domain-containing protein.	Hypothetical protein.	0.569
SKC70230.1	SKC73496.1	SAMN02194393_02401	SAMN02194393_02735	glutamate:Na+ symporter, ESS family; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.	Uncharacterized protein conserved in bacteria.	0.543
SKC72613.1	SKC73496.1	SAMN02194393_02629	SAMN02194393_02735	Hydrogenase maturation protease.	Uncharacterized protein conserved in bacteria.	0.602
SKC72613.1	SKC82909.1	SAMN02194393_02629	SAMN02194393_03775	Hydrogenase maturation protease.	Hypothetical protein.	0.453
SKC73479.1	SKC73489.1	SAMN02194393_02733	SAMN02194393_02734	Site-specific recombinases, DNA invertase Pin homologs.	Hypothetical protein.	0.823
SKC73479.1	SKC73496.1	SAMN02194393_02733	SAMN02194393_02735	Site-specific recombinases, DNA invertase Pin homologs.	Uncharacterized protein conserved in bacteria.	0.566
SKC73489.1	SKC73479.1	SAMN02194393_02734	SAMN02194393_02733	Hypothetical protein.	Site-specific recombinases, DNA invertase Pin homologs.	0.823
SKC73489.1	SKC73496.1	SAMN02194393_02734	SAMN02194393_02735	Hypothetical protein.	Uncharacterized protein conserved in bacteria.	0.566
SKC73496.1	SKC65999.1	SAMN02194393_02735	SAMN02194393_02063	Uncharacterized protein conserved in bacteria.	Acetyltransferase (GNAT) domain-containing protein.	0.632
SKC73496.1	SKC70230.1	SAMN02194393_02735	SAMN02194393_02401	Uncharacterized protein conserved in bacteria.	glutamate:Na+ symporter, ESS family; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.	0.543
SKC73496.1	SKC72613.1	SAMN02194393_02735	SAMN02194393_02629	Uncharacterized protein conserved in bacteria.	Hydrogenase maturation protease.	0.602
SKC73496.1	SKC73479.1	SAMN02194393_02735	SAMN02194393_02733	Uncharacterized protein conserved in bacteria.	Site-specific recombinases, DNA invertase Pin homologs.	0.566
SKC73496.1	SKC73489.1	SAMN02194393_02735	SAMN02194393_02734	Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.566
SKC73496.1	SKC82909.1	SAMN02194393_02735	SAMN02194393_03775	Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.566
SKC73496.1	SKC83179.1	SAMN02194393_02735	SAMN02194393_03836	Uncharacterized protein conserved in bacteria.	Predicted ATPase.	0.525
SKC73496.1	SKC84834.1	SAMN02194393_02735	SAMN02194393_04249	Uncharacterized protein conserved in bacteria.	DNA-binding transcriptional activator of the SARP family.	0.535
SKC73496.1	SKC91800.1	SAMN02194393_02735	SAMN02194393_05381	Uncharacterized protein conserved in bacteria.	2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase.	0.523
SKC73496.1	hutU	SAMN02194393_02735	SAMN02194393_01833	Uncharacterized protein conserved in bacteria.	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.	0.631
SKC82909.1	SKC65999.1	SAMN02194393_03775	SAMN02194393_02063	Hypothetical protein.	Acetyltransferase (GNAT) domain-containing protein.	0.569