Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKC72997.1 | SKC74013.1 | SAMN02194393_02671 | SAMN02194393_02801 | SSU ribosomal protein S1P. | DNA translocase FtsK. | 0.725 |
SKC72997.1 | polA | SAMN02194393_02671 | SAMN02194393_01911 | SSU ribosomal protein S1P. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.764 |
SKC72997.1 | recA | SAMN02194393_02671 | SAMN02194393_02796 | SSU ribosomal protein S1P. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.455 |
SKC74013.1 | SKC72997.1 | SAMN02194393_02801 | SAMN02194393_02671 | DNA translocase FtsK. | SSU ribosomal protein S1P. | 0.725 |
SKC74013.1 | SKC74017.1 | SAMN02194393_02801 | SAMN02194393_02802 | DNA translocase FtsK. | ATP-dependent Clp protease proteolytic subunit ClpP. | 0.724 |
SKC74013.1 | SKC78820.1 | SAMN02194393_02801 | SAMN02194393_03217 | DNA translocase FtsK. | Cell division protein FtsQ; Essential cell division protein. | 0.782 |
SKC74013.1 | SKC88897.1 | SAMN02194393_02801 | SAMN02194393_04939 | DNA translocase FtsK. | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | 0.737 |
SKC74013.1 | SKC88908.1 | SAMN02194393_02801 | SAMN02194393_04942 | DNA translocase FtsK. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.778 |
SKC74013.1 | ftsZ | SAMN02194393_02801 | SAMN02194393_03213 | DNA translocase FtsK. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.779 |
SKC74013.1 | mraZ | SAMN02194393_02801 | SAMN02194393_03227 | DNA translocase FtsK. | MraZ protein; Belongs to the MraZ family. | 0.676 |
SKC74013.1 | polA | SAMN02194393_02801 | SAMN02194393_01911 | DNA translocase FtsK. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.693 |
SKC74013.1 | recA | SAMN02194393_02801 | SAMN02194393_02796 | DNA translocase FtsK. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.676 |
SKC74013.1 | rnj | SAMN02194393_02801 | SAMN02194393_02288 | DNA translocase FtsK. | Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.721 |
SKC74017.1 | SKC74013.1 | SAMN02194393_02802 | SAMN02194393_02801 | ATP-dependent Clp protease proteolytic subunit ClpP. | DNA translocase FtsK. | 0.724 |
SKC74017.1 | recA | SAMN02194393_02802 | SAMN02194393_02796 | ATP-dependent Clp protease proteolytic subunit ClpP. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.564 |
SKC78820.1 | SKC74013.1 | SAMN02194393_03217 | SAMN02194393_02801 | Cell division protein FtsQ; Essential cell division protein. | DNA translocase FtsK. | 0.782 |
SKC78820.1 | ftsZ | SAMN02194393_03217 | SAMN02194393_03213 | Cell division protein FtsQ; Essential cell division protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.898 |
SKC78820.1 | mraZ | SAMN02194393_03217 | SAMN02194393_03227 | Cell division protein FtsQ; Essential cell division protein. | MraZ protein; Belongs to the MraZ family. | 0.597 |
SKC88897.1 | SKC74013.1 | SAMN02194393_04939 | SAMN02194393_02801 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | DNA translocase FtsK. | 0.737 |
SKC88897.1 | SKC88908.1 | SAMN02194393_04939 | SAMN02194393_04942 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | Chromosome segregation DNA-binding protein; Belongs to the ParB family. | 0.864 |
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