STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC79233.1Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit. (92 aa)    
Predicted Functional Partners:
SKC50192.1
Oxaloacetate decarboxylase, alpha subunit.
  
 
 0.825
SKC83282.1
Oxaloacetate decarboxylase, alpha subunit.
  
 
 0.825
SKC85452.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.815
SKC85567.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.809
SKC92808.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.776
SKC84815.1
NADH-quinone oxidoreductase subunit F.
    
  0.767
SKC48471.1
CoA-substrate-specific enzyme activase, putative.
    
  0.737
rnfB
4Fe-4S binding domain-containing protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.704
SKC83353.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.702
SKC51267.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
    
  0.692
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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