STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC81662.1Uncharacterized membrane protein YcaP, DUF421 family. (231 aa)    
Predicted Functional Partners:
SKC81672.1
Uncharacterized membrane protein YcaP, DUF421 family.
 
    
0.698
SKC85603.1
Spore germination protein KA.
 
  
 0.554
SKC85470.1
Spore germination protein KA.
 
  
 0.521
SKC91488.1
Stage V sporulation protein AC.
 
  
 0.502
SKC58517.1
Spore germination protein.
 
  
 0.484
SKC72767.1
Sporulation protein YtfJ.
  
     0.483
SKC91495.1
Stage V sporulation protein AE.
 
  
 0.465
SKC91492.1
Stage V sporulation protein AD.
 
  
 0.462
SKC81637.1
Alpha-ribazole kinase.
       0.458
SKC81647.1
Alpha-ribazole transporter.
       0.458
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.