STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC81718.1Helix-turn-helix domain-containing protein. (312 aa)    
Predicted Functional Partners:
SKC81729.1
Protein of unknown function DUF2620.
 
     0.902
SKC81748.1
Protein of unknown function.
 
     0.890
SKC81761.1
Predicted amino acid racemase.
     0.890
SKC81765.1
Phosphopentomutase.
     0.870
SKC81753.1
Cystathionine beta-lyase family protein involved in aluminum resistance.
 
     0.839
SKC73157.1
Predicted metal-dependent hydrolase, phosphotriesterase family.
 
     0.806
SKC81724.1
Transcriptional antiterminator.
  
    0.702
SKC83051.1
Protein of unknown function.
  
     0.482
SKC76942.1
LuxR family transcriptional regulator, maltose regulon positive regulatory protein.
  
     0.453
SKC83617.1
Hypothetical protein.
  
     0.429
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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