STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC82053.1Glucuronate isomerase. (76 aa)    
Predicted Functional Partners:
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.980
SKC82075.1
Fructuronate reductase.
 
 
 0.961
uxuA-2
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.956
uxaB
Tagaturonate reductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
 
 0.947
SKC86416.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.918
SKC86440.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.894
SKC82048.1
DNA-binding transcriptional regulator, GntR family.
 
   
 0.776
SKC87127.1
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.767
SKC49372.1
Xylan 1,4-beta-xylosidase.
     
 0.755
SKC84390.1
Gluconate 5-dehydrogenase.
 
 
 0.751
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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