STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC82888.1PQQ-like domain-containing protein. (450 aa)    
Predicted Functional Partners:
SKC82890.1
Hypothetical protein.
       0.773
SKC82914.1
Hypothetical protein.
 
   
 0.760
SKC82909.1
Hypothetical protein.
 
    0.742
SKC82881.1
Hypothetical protein.
       0.709
SKC82885.1
Hypothetical protein.
       0.709
SKC82902.1
Uncharacterized phage protein gp47/JayE.
 
     0.709
SKC82898.1
Hypothetical protein.
  
    0.688
SKC82905.1
Protein of unknown function.
       0.664
SKC82918.1
Hypothetical protein.
       0.642
SKC48632.1
Peptidyl-prolyl cis-trans isomerase C.
   
 
 0.615
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.