STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC83284.1Transcriptional regulator, AsnC family. (142 aa)    
Predicted Functional Partners:
SKC69785.1
Modular FeS cluster scaffolding protein NifU.
   
    0.825
SKC85567.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.791
SKC85452.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.787
SKC62810.1
Transcriptional regulator, AsnC family.
  
     0.773
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
 
 0.763
SKC51123.1
PTS system, glucose subfamily, IIA component.
   
 
  0.689
SKC82969.1
PTS system IIA component, Glc family.
   
 
  0.689
SKC88057.1
PTS system, beta-glucosides-specific IIC component.
   
 
  0.689
SKC90067.1
PTS system IIA component, Glc family (TC 4.A.1).
   
 
  0.689
SKC83353.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.664
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.