STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC83367.1Tetratricopeptide repeat-containing protein. (446 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.847
SKC89900.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.812
SKC83359.1
Serine protease AprX; Belongs to the peptidase S8 family.
 
     0.798
SKC42972.1
Methyl-accepting chemotaxis protein.
    
 0.775
SKC63953.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
 0.748
SKC83363.1
Hypothetical protein.
       0.737
SKC45770.1
Hypothetical protein.
   
 
 0.723
SKC51009.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
   
 
 0.723
SKC72929.1
Hypothetical protein.
   
 
 0.723
SKC90573.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
   
 
 0.723
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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