STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC83496.1Hypothetical protein. (193 aa)    
Predicted Functional Partners:
SKC83499.1
Hypothetical protein.
     0.986
SKC58569.1
LysM domain-containing protein.
  
 
 
 0.897
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.802
SKC50530.1
Outer membrane lipoprotein-sorting protein.
  
   
 0.782
SKC63953.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.780
SKC72779.1
NAD(P)H-flavin reductase.
 
   
 0.773
SKC50772.1
PrcB C-terminal.
  
     0.771
SKC70168.1
Putative membrane protein, TIGR04086 family.
  
     0.765
SKC56238.1
TATA-box binding.
  
   
 0.757
SKC70209.1
BofC C-terminal domain-containing protein.
  
     0.757
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.