STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC84319.1Peroxiredoxin Q/BCP. (152 aa)    
Predicted Functional Partners:
SKC40893.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
    
  0.768
trpC
Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
  
 
  0.711
SKC84862.1
Tryptophan synthase, alpha chain; Belongs to the TrpA family.
  
 
  0.677
SKC74468.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.672
SKC46385.1
Aldehyde oxidoreductase.
     
 0.670
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
    
  0.670
SKC84805.1
Selenium-dependent xanthine dehydrogenase.
     
 0.670
SKC61498.1
Transketolase; Belongs to the transketolase family.
    
  0.666
msrB
Peptide-methionine (R)-S-oxide reductase.
  
  
 0.646
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
      0.641
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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