STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC84401.1Regulator of RNase E activity RraA. (221 aa)    
Predicted Functional Partners:
SKC36579.1
4-oxalomesaconate hydratase.
 
  
 0.890
SKC84396.1
Altronate dehydratase small subunit.
 
     0.852
SKC84393.1
Altronate hydrolase.
 
     0.811
SKC84390.1
Gluconate 5-dehydrogenase.
 
 
  0.773
SKC84405.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
    
  0.720
SKC40893.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
     
 0.677
SKC50883.1
Acetolactate synthase, large subunit.
     
 0.675
SKC83103.1
Acetolactate synthase, large subunit.
     
 0.675
SKC79301.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
    
  0.645
SKC50180.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
 
 0.632
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.