STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC85195.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (233 aa)    
Predicted Functional Partners:
SKC85170.1
Signal transduction histidine kinase.
 0.988
SKC70812.1
PAS domain S-box-containing protein.
0.968
SKC40539.1
Signal transduction histidine kinase.
 0.951
SKC83502.1
PAS domain S-box-containing protein.
 0.950
SKC39053.1
PAS domain S-box-containing protein.
 0.949
SKC47495.1
Signal transduction histidine kinase.
 0.944
SKC53931.1
Signal transduction histidine kinase.
 0.944
SKC89648.1
Signal transduction histidine kinase.
 0.935
SKC39907.1
Response regulator receiver modulated diguanylate cyclase.
 
0.930
SKC59109.1
HAMP domain-containing protein.
 0.919
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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