STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC87152.1Sporulation integral membrane protein YlbJ. (425 aa)    
Predicted Functional Partners:
SKC79591.1
Similar to stage IV sporulation protein.
 
   
 0.863
SKC79602.1
Sporulation protein YqfC.
 
   
 0.853
SKC87333.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.814
SKC91157.1
Sporulation protein YabP.
  
   
 0.812
SKC87383.1
Sporulation factor SpoIIGA. Unknown type peptidase. MEROPS family U04; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.809
SKC58488.1
Stage II sporulation protein R.
  
   
 0.807
SKC56198.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
  
 0.806
SKC72230.1
Stage III sporulation protein AG.
  
   
 0.791
SKC72196.1
Stage III sporulation protein AA.
  
   
 0.789
SKC91181.1
Transcriptional regulator, AbrB family.
  
   
 0.786
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.