STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC87994.1Fluoroquinolone transport system ATP-binding protein. (284 aa)    
Predicted Functional Partners:
SKC87990.1
Fluoroquinolone transport system permease protein.
 
 
 0.987
SKC87981.1
Fluoroquinolone transport system permease protein.
 
 
 0.986
SKC76354.1
ABC-2 type transport system permease protein.
 
 
 0.900
SKC76349.1
ABC-2 type transport system permease protein.
 
  
 0.850
SKC84307.1
NitT/TauT family transport system ATP-binding protein.
 
  
 
0.832
SKC36528.1
ABC-2 type transport system permease protein.
  
 0.794
SKC72924.1
ABC-2 family transporter protein.
  
 0.794
SKC88267.1
Hypothetical protein.
  
 0.794
SKC38215.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-); Belongs to the ABC transporter superfamily.
 
  
 
0.751
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.674
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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