STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC90063.1Tryptophanase. (461 aa)    
Predicted Functional Partners:
SKC84862.1
Tryptophan synthase, alpha chain; Belongs to the TrpA family.
     
 0.774
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
 0.761
SKC90067.1
PTS system IIA component, Glc family (TC 4.A.1).
  
    0.529
SKC90074.1
Pentose-5-phosphate-3-epimerase.
       0.451
SKC70055.1
2-amino-4-ketopentanoate thiolase beta subunit.
     
 0.412
SKC70502.1
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.412
SKC86285.1
2-amino-4-ketopentanoate thiolase beta subunit.
     
 0.412
Your Current Organism:
Maledivibacter halophilus
NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.