SKC92172.1 protein (Maledivibacter halophilus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKC92172.1

Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. (120 aa)

Predicted Functional Partners:

SKC92167.1

0.999

argB

0.909

SKC84242.1

0.844

SKC43675.1

0.787

SKC49003.1

0.787

SKC85225.1

0.787

SKC86212.1

0.787

SKC54084.1

0.532

SKC76789.1

0.518

SKC83658.1

0.471

Your Current Organism:

Maledivibacter halophilus

NCBI taxonomy Id: 36842
Other names: ATCC 49637, Clostridium halophilium, Clostridium halophilum, DSM 5387, M. halophilus, strain M1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC43675.1	SKC83658.1	SAMN02194393_00848	SAMN02194393_03964	Tetratricopeptide repeat-containing protein.	Formate dehydrogenase major subunit.	0.624
SKC43675.1	SKC84242.1	SAMN02194393_00848	SAMN02194393_04044	Tetratricopeptide repeat-containing protein.	Glutamate synthase (NADPH/NADH) large chain.	0.438
SKC43675.1	SKC92172.1	SAMN02194393_00848	SAMN02194393_05444	Tetratricopeptide repeat-containing protein.	Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.	0.787
SKC49003.1	SKC83658.1	SAMN02194393_01085	SAMN02194393_03964	Hypothetical protein.	Formate dehydrogenase major subunit.	0.544
SKC49003.1	SKC84242.1	SAMN02194393_01085	SAMN02194393_04044	Hypothetical protein.	Glutamate synthase (NADPH/NADH) large chain.	0.430
SKC49003.1	SKC92172.1	SAMN02194393_01085	SAMN02194393_05444	Hypothetical protein.	Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.	0.787
SKC54084.1	SKC83658.1	SAMN02194393_01275	SAMN02194393_03964	Phosphoribosylformylglycinamidine synthase.	Formate dehydrogenase major subunit.	0.877
SKC54084.1	SKC84242.1	SAMN02194393_01275	SAMN02194393_04044	Phosphoribosylformylglycinamidine synthase.	Glutamate synthase (NADPH/NADH) large chain.	0.898
SKC54084.1	SKC92172.1	SAMN02194393_01275	SAMN02194393_05444	Phosphoribosylformylglycinamidine synthase.	Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.	0.532
SKC54084.1	argB	SAMN02194393_01275	SAMN02194393_05365	Phosphoribosylformylglycinamidine synthase.	N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.500
SKC76789.1	SKC83658.1	SAMN02194393_03036	SAMN02194393_03964	Aspartate ammonia-lyase.	Formate dehydrogenase major subunit.	0.461
SKC76789.1	SKC92167.1	SAMN02194393_03036	SAMN02194393_05443	Aspartate ammonia-lyase.	Ammonium transporter (TC 1.A.11).	0.644
SKC76789.1	SKC92172.1	SAMN02194393_03036	SAMN02194393_05444	Aspartate ammonia-lyase.	Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.	0.518
SKC83658.1	SKC43675.1	SAMN02194393_03964	SAMN02194393_00848	Formate dehydrogenase major subunit.	Tetratricopeptide repeat-containing protein.	0.624
SKC83658.1	SKC49003.1	SAMN02194393_03964	SAMN02194393_01085	Formate dehydrogenase major subunit.	Hypothetical protein.	0.544
SKC83658.1	SKC54084.1	SAMN02194393_03964	SAMN02194393_01275	Formate dehydrogenase major subunit.	Phosphoribosylformylglycinamidine synthase.	0.877
SKC83658.1	SKC76789.1	SAMN02194393_03964	SAMN02194393_03036	Formate dehydrogenase major subunit.	Aspartate ammonia-lyase.	0.461
SKC83658.1	SKC84242.1	SAMN02194393_03964	SAMN02194393_04044	Formate dehydrogenase major subunit.	Glutamate synthase (NADPH/NADH) large chain.	0.999
SKC83658.1	SKC85225.1	SAMN02194393_03964	SAMN02194393_04343	Formate dehydrogenase major subunit.	Hypothetical protein.	0.544
SKC83658.1	SKC86212.1	SAMN02194393_03964	SAMN02194393_04488	Formate dehydrogenase major subunit.	Cellulose synthase subunit.	0.706