STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF67018.1Indolepyruvate ferredoxin oxidoreductase beta subunit. (190 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.999
nifJ_1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.998
SFF67000.1
Indolepyruvate ferredoxin oxidoreductase alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
 0.991
korB
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
 
 0.936
SFF67060.1
Uncharacterized conserved protein, contains tandem ACT domains.
 
    0.911
SFF67035.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.907
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
 
 0.907
gltB_2
Glutamate synthase (NADH) large subunit.
    
 0.906
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.804
preA
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 
 0.748
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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