STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF68752.1Putative sporulation protein YyaC. (181 aa)    
Predicted Functional Partners:
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.833
spoIIIAE
Stage III sporulation protein AE.
  
     0.743
SFG01631.1
Stage III sporulation protein AG.
  
     0.739
SFG01523.1
Stage III sporulation protein AD.
  
     0.738
spoIIE
Stage II sporulation protein E.
  
     0.736
SFF67976.1
Stage II sporulation protein R.
  
     0.696
SFG01425.1
Stage III sporulation protein AA.
  
     0.674
spoIIID
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
     0.655
spo0A
Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.649
SFG58413.1
Putative sporulation protein YtxC.
  
     0.645
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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