STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF71427.1ABC-2 type transport system permease protein. (381 aa)    
Predicted Functional Partners:
drrA_2
ABC-2 type transport system ATP-binding protein.
 
 
 0.985
SFF71410.1
ABC-2 type transport system permease protein.
 
 
0.927
desK
Signal transduction histidine kinase.
 
  
 0.804
ybhF_2
ABC-2 type transport system ATP-binding protein.
 
 
 0.779
drrA_1
ABC-2 type transport system ATP-binding protein.
 
 
 0.742
nreC
Two component transcriptional regulator, LuxR family.
 
   
 0.717
ybhF_3
ABC-2 type transport system ATP-binding protein.
 
 
 0.711
ytrB_1
ABC-2 type transport system ATP-binding protein.
 
 
 0.661
SFG71392.1
ABC transporter.
 
 
 0.625
yxlF
ABC-2 type transport system ATP-binding protein.
 
 
 0.614
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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