STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glpGMembrane associated serine protease, rhomboid family. (196 aa)    
Predicted Functional Partners:
hflK
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.703
SFG51826.1
SPFH domain / Band 7 family protein.
   
 0.703
cwlC_1
N-acetylmuramoyl-L-alanine amidase.
  
   0.649
cwlD
N-acetylmuramoyl-L-alanine amidase.
  
   0.645
lytC
N-acetylmuramoyl-L-alanine amidase CwlD.
  
   0.645
cwlC_2
Putative peptidoglycan binding domain-containing protein.
  
   0.645
SFG65157.1
Hypothetical protein.
  
   0.645
amiC_1
N-acetylmuramoyl-L-alanine amidase.
  
   0.645
amiB
N-acetylmuramoyl-L-alanine amidase.
  
   0.645
SFF69899.1
Y_Y_Y domain-containing protein.
  
   0.635
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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