STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF77852.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
SFF77877.1
Predicted permease.
 
     0.962
rsxB_4
4Fe-4S single cluster domain of Ferredoxin I.
 
     0.801
pspA_2
Alpha-ribazole phosphatase; Belongs to the phosphoglycerate mutase family.
       0.639
cobU
Adenosylcobinamide kinase.
       0.639
cobS
Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
       0.607
SFF77826.1
Transcriptional regulator, ArsR family.
     
 0.556
SFF77798.1
Ferredoxin.
 
    0.502
cotA
Spore coat protein A; Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).
  
  
 0.490
SFF76812.1
Predicted metal-binding protein.
 
     0.473
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.457
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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