STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycG_3Hypothetical protein. (366 aa)    
Predicted Functional Partners:
srrA_3
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.976
barA
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.962
luxQ_1
Predicted ATPase.
 
 
0.960
SFF78224.1
ABC-2 type transport system permease protein.
 
     0.887
srrA_2
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.869
arlR_1
Response regulator receiver domain-containing protein.
 0.865
phoP_3
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 
 0.844
yxlF
ABC-2 type transport system ATP-binding protein.
 
   
 0.837
walR_3
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.836
walR_5
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.831
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.