STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF82731.1Protein of unknown function. (182 aa)    
Predicted Functional Partners:
SFF82701.1
Protein of unknown function.
 
     0.949
SFF82673.1
Hypothetical protein.
 
   
 0.945
SFF82643.1
Hypothetical protein.
 
     0.918
polA_3
DNA polymerase.
 
     0.900
SFF82880.1
VRR-NUC domain-containing protein.
 
     0.833
SFF82913.1
SNF2 family N-terminal domain-containing protein.
 
     0.833
SFF82850.1
Virulence-associated protein E.
 
     0.831
SFF82822.1
Hypothetical protein.
 
     0.792
SFG25827.1
Hypothetical protein.
 
     0.784
polA_1
DNA polymerase.
 
     0.784
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.