STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttdAFumarase, class I alpha subunit. (280 aa)    
Predicted Functional Partners:
fumB
Fumarate hydratase subunit beta.
 
 0.999
ifcA
Dissimilatory adenylylsulfate reductase alpha subunit precursor.
  
 
 0.948
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.939
argH
Argininosuccinate lyase.
    
 0.857
sfrB
Aldehyde dehydrogenase, iron-sulfur subunit.
    
 0.780
SFF89830.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
 
 0.755
SFF90774.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
 
 0.755
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.746
nifJ_1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.745
SFF71513.1
Phosphoenolpyruvate carboxykinase (ATP).
   
 
 0.742
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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