STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetD_1Regulatory helix-turn-helix protein, AraC family. (71 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.869
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.715
gltB_2
Glutamate synthase (NADH) large subunit.
    
  0.703
nifJ_1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.702
arcB
Signal transduction histidine kinase.
  
 
 0.694
rpfC
ABC transporter substrate binding protein.
  
 
 0.685
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.669
yesS_1
Transcriptional regulator, AraC family.
    
  0.659
sfrB
Aldehyde dehydrogenase, iron-sulfur subunit.
  
  
 0.502
luxQ_1
Predicted ATPase.
 
 
 0.501
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.