STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykuD_3L,D-transpeptidase catalytic domain. (83 aa)    
Predicted Functional Partners:
SFG98114.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
 
  0.625
ytcD
Transcriptional regulator, HxlR family.
       0.522
trxB_2
Thioredoxin reductase (NADPH).
  
    0.418
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
       0.416
cca_1
tRNA nucleotidyltransferase (CCA-adding enzyme); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.416
dsbD_1
Sulfite exporter TauE/SafE.
       0.416
recQ
ATP-dependent DNA helicase, RecQ-like.
       0.416
wapA_1
RHS repeat-associated core domain-containing protein.
  
 
  0.406
SFF87889.1
Hypothetical protein.
       0.402
luxQ_1
Predicted ATPase.
  
  
 0.402
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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