STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stp_1Predicted arabinose efflux permease, MFS family. (425 aa)    
Predicted Functional Partners:
arcB
Signal transduction histidine kinase.
     
 0.716
pheA
Chorismate mutase.
  
 
 0.668
SFF91640.1
Hypothetical protein.
  
    0.650
metH
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 
  0.622
yehT
Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains.
       0.565
gltB_2
Glutamate synthase (NADH) large subunit.
     
 0.456
barA
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.449
smc_2
Hypothetical protein.
       0.445
mdtG_1
MFS-type transporter involved in bile tolerance, Atg22 family.
  
 
 0.434
sauU
Predicted arabinose efflux permease, MFS family.
  
 
 0.416
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.