STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF91828.1VTC domain-containing protein. (235 aa)    
Predicted Functional Partners:
SFF91847.1
Protein of unknown function.
 
    0.979
cotH
Spore coat protein H.
 
     0.840
SFG34443.1
Protein of unknown function.
 
    0.837
SFG80863.1
Hypothetical protein.
    
 0.825
SFF91926.1
Uncharacterized membrane protein.
       0.668
SFF91762.1
UDP-glucose 4-epimerase.
  
    0.658
SFF91786.1
Uncharacterized protein; Endo alpha-1,4 polygalactosaminidase, GH114 family (was erroneously annotated as Cys-tRNA synthetase).
       0.653
SFF91886.1
Hypothetical protein.
       0.639
SFF91859.1
Hypothetical protein.
  
    0.634
SFG44190.1
Putative Mg2+ transporter-C (MgtC) family protein.
 
    0.624
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.