STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF93930.1Hypothetical protein. (420 aa)    
Predicted Functional Partners:
SFF93903.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.801
SFF93878.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.752
wecA
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.736
glgA_1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.686
algA
Mannose-1-phosphate guanylyltransferase (GDP).
  
  
 0.684
epsH
Glycosyl transferases group 1.
  
 
 0.680
SFF93983.1
Hypothetical protein.
  
 
 0.672
manA_2
Mannose-6-phosphate isomerase, type 1.
       0.521
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.516
pseB
Polysaccharide biosynthesis protein.
  
  
 0.516
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.