Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF89065.1 | SFF89086.1 | SAMN04488501_10364 | SAMN04488501_10365 | Putative DNA-binding domain-containing protein. | Hypothetical protein. | 0.687 |
SFF89065.1 | tyrS | SAMN04488501_10364 | SAMN04488501_10367 | Putative DNA-binding domain-containing protein. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.526 |
SFF89086.1 | SFF89065.1 | SAMN04488501_10365 | SAMN04488501_10364 | Hypothetical protein. | Putative DNA-binding domain-containing protein. | 0.687 |
SFF89086.1 | cdr_1 | SAMN04488501_10365 | SAMN04488501_105165 | Hypothetical protein. | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family. | 0.621 |
SFF89086.1 | cdr_2 | SAMN04488501_10365 | SAMN04488501_105164 | Hypothetical protein. | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase. | 0.618 |
SFF89086.1 | cpdA | SAMN04488501_10365 | SAMN04488501_10370 | Hypothetical protein. | Hypothetical protein. | 0.597 |
SFF89086.1 | dnaC_1 | SAMN04488501_10365 | SAMN04488501_13312 | Hypothetical protein. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.755 |
SFF89086.1 | dnaC_2 | SAMN04488501_10365 | SAMN04488501_11730 | Hypothetical protein. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.755 |
SFF89086.1 | dnaC_3 | SAMN04488501_10365 | SAMN04488501_12337 | Hypothetical protein. | DNA replication protein DnaC. | 0.701 |
SFF89086.1 | dnaN | SAMN04488501_10365 | SAMN04488501_1176 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.958 |
SFF89086.1 | recF | SAMN04488501_10365 | SAMN04488501_1174 | Hypothetical protein. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.575 |
SFF89086.1 | tyrS | SAMN04488501_10365 | SAMN04488501_10367 | Hypothetical protein. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.671 |
cdr_1 | SFF89086.1 | SAMN04488501_105165 | SAMN04488501_10365 | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family. | Hypothetical protein. | 0.621 |
cdr_1 | cdr_2 | SAMN04488501_105165 | SAMN04488501_105164 | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family. | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase. | 0.990 |
cdr_1 | tyrS | SAMN04488501_105165 | SAMN04488501_10367 | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.431 |
cdr_2 | SFF89086.1 | SAMN04488501_105164 | SAMN04488501_10365 | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase. | Hypothetical protein. | 0.618 |
cdr_2 | cdr_1 | SAMN04488501_105164 | SAMN04488501_105165 | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase. | NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family. | 0.990 |
cpdA | SFF89086.1 | SAMN04488501_10370 | SAMN04488501_10365 | Hypothetical protein. | Hypothetical protein. | 0.597 |
cpdA | tyrS | SAMN04488501_10370 | SAMN04488501_10367 | Hypothetical protein. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.647 |
dnaC_1 | SFF89086.1 | SAMN04488501_13312 | SAMN04488501_10365 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Hypothetical protein. | 0.755 |
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