STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF89332.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
SFF89378.1
Hypothetical protein.
 
     0.955
dnaJ_2
DnaJ domain-containing protein.
 
    0.923
SFF89399.1
Adenylate cyclase, class 2.
 
     0.863
SFG01658.1
Stage III sporulation protein AH.
  
     0.659
SFF89447.1
Hypothetical protein.
 
     0.648
SFG58442.1
Hypothetical protein.
  
     0.520
SFF89418.1
Sporulation and spore germination.
       0.493
SFF99521.1
Flagellar FliJ protein.
  
     0.478
SFF97656.1
Preprotein translocase subunit YajC.
  
     0.471
ybbH
Transcriptional regulator, RpiR family.
 
     0.459
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.