STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF89399.1Adenylate cyclase, class 2. (182 aa)    
Predicted Functional Partners:
SFF89378.1
Hypothetical protein.
 
    0.885
cyaB
Adenylate cyclase.
     
 0.879
SFF89332.1
Hypothetical protein.
 
     0.863
moaA_1
Cyclic pyranopterin monophosphate synthase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
    
  0.854
relA
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
  0.850
ndk
Nucleoside diphosphate kinase; Belongs to the NDK family.
    
  0.850
SFG57208.1
Hypothetical protein.
  
  
  0.835
dnaJ_2
DnaJ domain-containing protein.
 
     0.831
SFG68241.1
Helix-turn-helix domain-containing protein.
 
     0.753
SFF69333.1
Endodeoxyribonuclease RusA.
  
     0.743
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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