STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF89507.1Uncharacterized membrane protein YcaP, DUF421 family. (232 aa)    
Predicted Functional Partners:
SFF89488.1
Protein of unknown function.
       0.839
thrS
Uridine kinase.
       0.655
fba_1
Fructose-bisphosphate aldolase, class II.
       0.610
ytfJ
Sporulation protein YtfJ.
  
     0.591
SFF89575.1
Hypothetical protein.
       0.531
SFG17776.1
Stage V sporulation protein AE.
 
  
 0.520
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.516
SFG28661.1
Stage II sporulation protein P.
  
     0.507
spoVAD_2
Stage V sporulation protein AD.
 
  
 0.504
SFG17847.1
Stage V sporulation protein AC.
 
    0.498
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.