STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF97681.1Putative membrane protein, TIGR04086 family. (122 aa)    
Predicted Functional Partners:
SFG79672.1
MazG-like family protein.
  
     0.756
SFG44039.1
Hypothetical protein.
  
     0.736
SFF97656.1
Preprotein translocase subunit YajC.
       0.718
SFG45258.1
Helix-turn-helix.
  
     0.703
SFF97706.1
Six-cysteine peptide SCIFF.
       0.699
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
       0.691
SFG01602.1
Stage III sporulation protein AF.
  
    0.664
SFF99521.1
Flagellar FliJ protein.
  
     0.644
SFG58757.1
Small, acid-soluble spore protein, alpha/beta type.
  
    0.642
SFG68214.1
Tetratricopeptide repeat-containing protein.
  
     0.640
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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