Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFG06276.1 | ddl_1 | SAMN04488501_1054 | SAMN04488501_1052 | Uncharacterized membrane protein. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.569 |
| SFG06276.1 | lysN_1 | SAMN04488501_1054 | SAMN04488501_1053 | Uncharacterized membrane protein. | Transcriptional regulator, GntR family. | 0.595 |
| SFG45863.1 | aroC | SAMN04488501_109138 | SAMN04488501_109141 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.981 |
| SFG45863.1 | lysN_1 | SAMN04488501_109138 | SAMN04488501_1053 | Prephenate dehydrogenase. | Transcriptional regulator, GntR family. | 0.509 |
| SFG45863.1 | metH | SAMN04488501_109138 | SAMN04488501_10527 | Prephenate dehydrogenase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.630 |
| SFG45863.1 | pheA | SAMN04488501_109138 | SAMN04488501_109142 | Prephenate dehydrogenase. | Chorismate mutase. | 0.995 |
| SFG45863.1 | trpA | SAMN04488501_109138 | SAMN04488501_106111 | Prephenate dehydrogenase. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.643 |
| aroC | SFG45863.1 | SAMN04488501_109141 | SAMN04488501_109138 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Prephenate dehydrogenase. | 0.981 |
| aroC | lysN_1 | SAMN04488501_109141 | SAMN04488501_1053 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Transcriptional regulator, GntR family. | 0.496 |
| aroC | pdhD | SAMN04488501_109141 | SAMN04488501_10510 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Dihydrolipoamide dehydrogenase. | 0.491 |
| aroC | pheA | SAMN04488501_109141 | SAMN04488501_109142 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Chorismate mutase. | 0.998 |
| aroC | trpA | SAMN04488501_109141 | SAMN04488501_106111 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.705 |
| aroC | trpB_2 | SAMN04488501_109141 | SAMN04488501_106112 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.602 |
| ddl_1 | SFG06276.1 | SAMN04488501_1052 | SAMN04488501_1054 | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | Uncharacterized membrane protein. | 0.569 |
| ddl_1 | lysN_1 | SAMN04488501_1052 | SAMN04488501_1053 | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | Transcriptional regulator, GntR family. | 0.833 |
| lysN_1 | SFG06276.1 | SAMN04488501_1053 | SAMN04488501_1054 | Transcriptional regulator, GntR family. | Uncharacterized membrane protein. | 0.595 |
| lysN_1 | SFG45863.1 | SAMN04488501_1053 | SAMN04488501_109138 | Transcriptional regulator, GntR family. | Prephenate dehydrogenase. | 0.509 |
| lysN_1 | aroC | SAMN04488501_1053 | SAMN04488501_109141 | Transcriptional regulator, GntR family. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.496 |
| lysN_1 | ddl_1 | SAMN04488501_1053 | SAMN04488501_1052 | Transcriptional regulator, GntR family. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.833 |
| lysN_1 | metH | SAMN04488501_1053 | SAMN04488501_10527 | Transcriptional regulator, GntR family. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.551 |
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