STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csoR_1DNA-binding transcriptional regulator, FrmR family. (88 aa)    
Predicted Functional Partners:
copA_1
Cu+-exporting ATPase.
  
  
 0.839
copZ_1
Copper ion binding protein.
  
  
 0.770
csoR_2
DNA-binding transcriptional regulator, FrmR family.
  
     0.742
SFG27474.1
Hypothetical protein.
       0.714
fliN
Flagellar motor switch protein FliN/FliY.
    
   0.636
cadA
Cd2+/Zn2+-exporting ATPase.
  
  
 0.535
copA_2
Cu+-exporting ATPase.
  
  
 0.535
SFG27562.1
Hypothetical protein.
       0.515
copZ_2
Copper ion binding protein.
  
  
 0.512
dsbD_1
Sulfite exporter TauE/SafE.
  
  
 0.503
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.