SFG34443.1 protein (Clostridium homopropionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFG34443.1

Protein of unknown function. (191 aa)

Predicted Functional Partners:

SFG34414.1

0.969

SFF91828.1

0.837

SFG34491.1

0.808

SFG99078.1

0.777

arnC_1

0.662

arlR_2

0.646

arlS_1

0.643

flhB_1

0.636

SFF67242.1

0.510

SFF78834.1

0.510

Your Current Organism:

Clostridium homopropionicum

NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFF67242.1	SFG34443.1	SAMN04488501_101161	SAMN04488501_10816	Ca2+-transporting ATPase.	Protein of unknown function.	0.510
SFF78834.1	SFG34443.1	SAMN04488501_102175	SAMN04488501_10816	Ca2+-transporting ATPase.	Protein of unknown function.	0.510
SFF91828.1	SFG34414.1	SAMN04488501_103189	SAMN04488501_10815	VTC domain-containing protein.	VTC domain-containing protein.	0.541
SFF91828.1	SFG34443.1	SAMN04488501_103189	SAMN04488501_10816	VTC domain-containing protein.	Protein of unknown function.	0.837
SFF91828.1	SFG99078.1	SAMN04488501_103189	SAMN04488501_13117	VTC domain-containing protein.	Protein of unknown function.	0.497
SFG34414.1	SFF91828.1	SAMN04488501_10815	SAMN04488501_103189	VTC domain-containing protein.	VTC domain-containing protein.	0.541
SFG34414.1	SFG34443.1	SAMN04488501_10815	SAMN04488501_10816	VTC domain-containing protein.	Protein of unknown function.	0.969
SFG34414.1	SFG34491.1	SAMN04488501_10815	SAMN04488501_10817	VTC domain-containing protein.	Exopolysaccharide biosynthesis protein.	0.661
SFG34414.1	SFG99078.1	SAMN04488501_10815	SAMN04488501_13117	VTC domain-containing protein.	Protein of unknown function.	0.783
SFG34414.1	arlR_2	SAMN04488501_10815	SAMN04488501_10814	VTC domain-containing protein.	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.	0.664
SFG34414.1	arlS_1	SAMN04488501_10815	SAMN04488501_10813	VTC domain-containing protein.	Signal transduction histidine kinase.	0.710
SFG34414.1	arnC_1	SAMN04488501_10815	SAMN04488501_10818	VTC domain-containing protein.	Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).	0.513
SFG34443.1	SFF67242.1	SAMN04488501_10816	SAMN04488501_101161	Protein of unknown function.	Ca2+-transporting ATPase.	0.510
SFG34443.1	SFF78834.1	SAMN04488501_10816	SAMN04488501_102175	Protein of unknown function.	Ca2+-transporting ATPase.	0.510
SFG34443.1	SFF91828.1	SAMN04488501_10816	SAMN04488501_103189	Protein of unknown function.	VTC domain-containing protein.	0.837
SFG34443.1	SFG34414.1	SAMN04488501_10816	SAMN04488501_10815	Protein of unknown function.	VTC domain-containing protein.	0.969
SFG34443.1	SFG34491.1	SAMN04488501_10816	SAMN04488501_10817	Protein of unknown function.	Exopolysaccharide biosynthesis protein.	0.808
SFG34443.1	SFG99078.1	SAMN04488501_10816	SAMN04488501_13117	Protein of unknown function.	Protein of unknown function.	0.777
SFG34443.1	arlR_2	SAMN04488501_10816	SAMN04488501_10814	Protein of unknown function.	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.	0.646
SFG34443.1	arlS_1	SAMN04488501_10816	SAMN04488501_10813	Protein of unknown function.	Signal transduction histidine kinase.	0.643