STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cssS_1Two-component system, OmpR family, sensor histidine kinase CssS. (458 aa)    
Predicted Functional Partners:
cssR
Two-component system, OmpR family, response regulator CssR.
 
 0.995
barA
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.990
luxQ_1
Predicted ATPase.
 
0.988
pdhD
Dihydrolipoamide dehydrogenase.
    
 0.984
gmr_3
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.926
walR_5
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.905
SFF89853.1
PAS domain S-box-containing protein.
 
 0.900
regX3_4
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.899
tmoS_2
Predicted ATPase.
   
0.897
walR_1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.893
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.