STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG50864.1Transcriptional regulator, LytTR family. (145 aa)    
Predicted Functional Partners:
arcB
Signal transduction histidine kinase.
  
 0.900
rpfC
ABC transporter substrate binding protein.
  
 0.900
ypdA
Two-component system, LytT family, sensor kinase.
 
 0.756
SFG80051.1
Two-component system, AgrA family, sensor histidine kinase AgrC.
  
 
 0.705
SFG50910.1
Protein of unknown function.
       0.671
barA
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.658
luxQ_1
Predicted ATPase.
    
 0.654
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.640
SFG50984.1
ABC-2 type transport system permease protein.
 
     0.636
ybhF_3
ABC-2 type transport system ATP-binding protein.
  
    0.606
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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