STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG59795.1Tetratricopeptide repeat-containing protein. (118 aa)    
Predicted Functional Partners:
SFF75959.1
Tetratricopeptide repeat-containing protein.
 
  
 0.830
bepA
Tetratricopeptide repeat-containing protein.
 
 
 0.794
SFG57208.1
Hypothetical protein.
 
 
 0.786
SFF81515.1
Outer membrane lipoprotein-sorting protein.
 
 
   0.782
SFG68241.1
Helix-turn-helix domain-containing protein.
  
 
   0.777
SFG68214.1
Tetratricopeptide repeat-containing protein.
 
 
 
 0.764
SFF69333.1
Endodeoxyribonuclease RusA.
  
     0.750
SFG01658.1
Stage III sporulation protein AH.
  
     0.744
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.742
SFG69931.1
Hypothetical protein.
  
    0.742
Your Current Organism:
Clostridium homopropionicum
NCBI taxonomy Id: 36844
Other names: ATCC 51426, C. homopropionicum, DSM 5847, strain LuHBu1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.